Research Interests

• Bioinformatics, Neural Networks, Genetic Algorithms and Data mining

Journals                     

·        Shubhra Sankar Ray, Sukanya Halder and Dhananajay Bhattacharyya, “HD-RNAS: A Hierarchical Database of RNA Structures.”, Communicated.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “Combining Multi-Source Information through Functional Annotation based Weighting: Gene Function Prediction in Yeast”, IEEE Transactions on Biomedical Engineering, vol. 56, no. 2, pp. 229-236, 2009. This is a curated Paper in Saccharomyces Genome Database.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “Gene Ordering in Partitive Clustering using Microarray Expressions”, Journal of Biosciences, vol. 32, no. 5, pp. 1019-1025, 2007 (Special Issue- Bioinformatics: From Molecules to Systems).

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “Dynamic Range Based Distance Measure for Microarray Expressions and A Fast Gene Ordering Algorithm”, IEEE Transactions on Systems, Man, and Cybernetics, Part-B, vol. 37, no. 3, pp. 742-749, 2007.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “Genetic Operators for Combinatorial Optimization in TSP and Microarray Gene Ordering. ”, Applied Intelligence, vol. 26, no. 3, pp. 183-195, 2007.

·        Sankar K. Pal, Sanghamitra Bandyopadhyay and Shubhra Sankar Ray, “Evolutionary Computation in Bioinformatics: A Review”, IEEE Transactions on Systems, Man, and Cybernetics, Part-C, vol. 36, no. 5, pp. 601-615, 2006.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay, Pabitra Mitra and Sankar K. Pal, “Bioinformatics in Neurocomputing Framework”, IEE Proc. Circuits Devices & Systems, vol. 152, pp. 556-564, 2005. (and CODEC-04, pp. 94, January 1-3, 2004, Kolkata).

Book Chapters and Conference Papers

·        Shubhra Sankar Ray, Munia Bachhar, and Sankar K. Pal “RNA Secondary Structure Prediction in Soft Computing Framework: A Review ”, The 3rd IEEE International Conference on Computer Science and Information Technology (ICCSIT 2010), vol. 5, pp. 430-435, July 9-11, Chengdu, China, 2010.

·        Shubhra Sankar Ray, Sukanya Halder and Dhananjay Bhattacharya, “HD-RNAS: Hierarchical Database of RNA Structures ”, International Conference on Frontiers of Interface Between Statistics and Sciences, pp. 724, December 30, 2009 - January 2, India, 2010.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “Predicting Gene Function in Yeast through Adaptive Weighting of Multi-Source Information ”, The Eighth International Conference on Systems Biology, pp. 63, no. H03, October 1-6, Long Beach, California, USA, 2007. Full paper

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “New Distance Measure for Microarray Gene Expressions using Linear Dynamic Range of Photo Multiplier Tube ”, International Conference on Computing: Theory and Applications, IEEE Computer Soceity, pp. 337-341, March 5-7, 2007, Kolkata, India. Slides presented in the conference

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “Gene Ordering in Partitive Clustering using Microarray Expressions”, International Conference on Bioinformatics, INCOB 2006, pp. 33, 18-20 December, New Delhi, 2006.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay, and Sankar K. Pal, “New Genetic Operators for Solving TSP: Application to Microarray Gene Ordering”, First International Conference, PReMI 2005, Lecture Notes in Computer Science, vol. 3776, pp. 617-622, 2005, Springer-Verlag, Berlin, 2005.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay, Pabitra Mitra, and Sankar K. Pal, “Neurocomputing for Certain Bioinformatics Tasks”, Monitoring, Security, and Rescue Techniques in Multi-Agent Systems, Proc. Int. Workshop MSRAS, pp. 439-454, 2004, Springer-Verlag, Berlin, 2005.

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay and Sankar K. Pal, “New Operators of Genetic algorithms for Traveling Salesman Problem”, ICPR-04, vol. 2, pp. 497-500, 23-26 August 2004, Cambridge, UK

·        Shubhra Sankar Ray, Sanghamitra Bandyopadhyay, Pabitra Mitra and Sankar K. Pal, “Bioinformatics in Neurocomputing Framework”, CODEC-04, pp. 94, January 1-3, 2004, Kolkata, India

Softwares

• Softwares for Gene Expression

Education

• Research Associate in BioPhysics Division -- July 2008 to August 2009 Saha Institute of Nuclear Physics, Kolkata.
• Phd in Engineering (Jadavpur University) – November  2008, Kolkata.
• M. Tech (Radiophysics and Electronics) – May  2002, Kolkata.
• M. Sc (Electronic Science) - May 2000 – University of Calcutta .
• B. Sc (Physics Hons.) -- July 1995 to May 1998 – University of Calcutta.
• Resume

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Interesting Links

• A Introduction to Microarray Technology by Jennifer A. Love of Whitehead Institute Center for Microarray Technology
• Mathworld Resource Library : THE ultimate online Reference for Mathematics.
• Best Chess Games

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